Liver hepatocellular carcinoma — ranked gene evidence

TCGA-LIHC · 50 ranked genes · over-expressed in tumor, supported by survival / mutation / known-driver evidence

#GeneCompositeOver-expr (log2FC)GDC tumor vs normal−log10 pGDCTumor-specificity vs GTExGTEx healthy tissueMutation freqGDC SSMSurvival p (hi-expr)GDC clinicalKnown driverintOGen
1REG3A16.418.7424.68.770.0009.0e-01 ↑worse—
2AFP13.727.2825.38.040.0005.2e-01 ↑worse—
3GPC312.996.4849.38.580.0004.5e-01 ↑worse—
4SPP112.755.1720.26.780.0005.5e-05 ↑worse—
5FASN12.741.7312.31.480.0664.4e-02 ↑worse—
6PGC12.167.4329.45.830.0003.9e-01 ↑worse—
7S100P11.966.2426.37.170.0001.0e-01 ↑worse—
8REG1A11.337.3424.65.030.0004.0e-01 ↑worse—
9BAP111.281.1526.20.730.0505.8e-02 ↑worseLoF
10NQO110.335.1331.56.520.0001.7e-02 ↑worse—
11AKR1B1010.284.0815.58.070.0008.3e-03 ↑worse—
12SMARCA410.031.6041.40.740.0296.3e-02 ↑worseLoF
13RUSC19.961.9152.71.330.0246.9e-03 ↑worse—
14PAEP9.774.9117.84.940.0007.9e-04 ↑worse—
15MAP29.721.6220.22.040.0291.2e-01 ↑worse—
16MUC139.685.3130.16.650.0002.8e-01 ↑worse—
17DLK19.666.058.06.380.0001.5e-02 ↓—
18CDC209.574.1781.04.640.0003.2e-05 ↑worse—
19ALDH3A19.255.3317.16.280.0004.1e-01 ↑worse—
20PEG109.014.9119.26.100.0008.7e-02 ↑worse—
21NSD28.981.4854.30.950.0191.6e-02 ↑worseAct
22SFN8.944.1926.45.160.0005.9e-04 ↑worse—
23CCL258.825.6529.85.990.0004.5e-02 ↓—
24NOP568.721.5928.11.130.0168.0e-04 ↑worse—
25LCN28.655.1224.66.030.0004.8e-01 ↑worse—
26CST18.635.5017.95.660.0008.6e-01 ↓—
27PABPC18.621.7135.71.520.0113.5e-03 ↑worseAct
28TOP2A8.593.8071.44.310.0001.1e-03 ↑worseAct
29FDCSP8.434.7710.95.200.0003.0e-02 ↑worse—
30LMNA8.291.5723.12.380.0138.7e-03 ↑worse—
31NACA8.241.0529.20.960.0192.0e-02 ↑worseambiguous
32PTTG18.163.6973.64.160.0006.0e-05 ↑worse—
33KIFC18.073.4692.73.860.0001.5e-05 ↑worse—
34MDK7.954.3134.76.360.0002.2e-01 ↑worse—
35LAMB17.851.4214.10.340.0192.6e-03 ↑worse—
36COPA7.661.3130.71.440.0193.5e-02 ↑worse—
37MYBL27.644.1490.34.470.0003.2e-03 ↑worse—
38PAGE47.595.1023.35.210.0006.5e-01 ↓—
39TSC27.571.1231.7-0.850.0323.7e-01 ↑worseLoF
40BAG67.541.1836.31.310.0192.0e-02 ↑worse—
41MAP1S7.491.0820.21.410.0216.4e-02 ↑worse—
42CCNB17.423.5574.74.110.0002.2e-04 ↑worse—
43BIRC57.393.7086.03.700.0001.7e-04 ↑worse—
44PTK27.381.3537.61.670.0163.7e-02 ↑worse—
45SPINK17.303.439.46.160.0002.1e-02 ↑worse—
46MED247.281.2838.40.790.0216.3e-02 ↑worse—
47CHD47.271.0127.4-1.650.0211.9e-03 ↑worseAct
48DDR17.261.9611.02.670.0133.0e-01 ↓—
49LINC014197.254.6840.04.690.0001.5e-01 ↑worse—
50ETV47.103.0633.03.810.0008.1e-04 ↑worseAct
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